Video bioinformatics: from live imaging to knowledge: automated methods for spatio-temporal dynamics: brain injury, plant growth, dynamic nature of stem cells, cell tracking & trafficking, changing morphology, facial expressions: live imaging data: fluorescence microscopy, phase contrast imaging, optical coherence tomography, magnetic resonance imaging, brightfield imaging

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Part I: Video Bioinformatics: An IntroductionLive Imaging and Video BioinformaticsBir Bhanu and Prue TalbotVideo Bioinformatics Methods for Analyzing Cell Dynamics: A SurveyNirmalya GhoshPart II: Organismal Dynamics: Analyzing Brain Injury and DiseaseHigh and Low Level Contextual Modeling for the Detection of Mild-Traumatic Brain Injury Anthony Bianchi, Bir Bhanu and Andre ObenausAutomated Identification of Injury Dynamics after Neonatal Hypoxia-IschemiaNirmalya Ghosh, Stephen Ashwal and Andre ObenausA Real-Time Analysis of Traumatic Brain Injury from T2 Weighted Magnetic Resonance Images using a Symmetry-Based AlgorithmEhsan T. Esfahani, Devin W. McBride, Somayeh B. Shafiei and Andre ObenausVisualizing Cortical Tissue Optical Changes during Seizure Activity with Optical Coherence TomographyMelissa M. Eberle, Carissa L. Rodriguez, Jenny I. Szu, Yan Wang, Mike S. Hsu, Devin K. Binder and B. Hyle ParkPart III: Dynamics of Stem CellsBio-Inspired Segmentation and Detection Methods for Human Embryonic Stem CellsBenjamin X. Guan, Bir Bhanu, Prue Talbot and Jo-Hao WengA Video Bioinformatics Method to Quantify Cell Spreading and Its Application to Cells Treated with Rho-associated Protein Kinase and Blebbistatin Jo-Hao Weng, Rattapol Phandthong and Prue TalbotEvaluation of Dynamic Cell Processes and Behavior Using Video Bioinformatics ToolsSabrina C. Lin, Henry Yip, Rattapol Phandthong, Barbara Davis and Prue TalbotPart IV: Dynamic Processes in Plant and Fungal SystemsVideo Bioinformatics: A New Dimension in Quantifying Plant Cell DynamicsNolan Ung and Natasha V RaikhelUnderstanding Growth of Pollen Tube in VideoAsongu L. Tambo, Bir Bhanu, Nan Luo and Zhenbiao YangAutomatic Image Analysis Pipeline for Studying Growth in Katya Mkrtchyan, Anirban Chakraborty, Min Liu and Amit Roy-ChowdhuryQuantitative Analyses using Video Bioinformatics and Image Analysis Tools During Growth and Development in the Multicellular Fungus Neurospora CrassaIlva E. Cabrera, Asongu L. Tambo, Alberto C. Cruz, Benjamin X. Guan, Bir Bhanu and Katherine A. BorkovichPart V: Dynamics of Intracellular MoleculesQuantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and H2AXTorsten Groesser, Gerald Fontenay, Ju Han, Hang Chang and Bahram ParvinA Method to Regulate Cofilin Transport Using Optogenetics and Live Video AnalysisAtena Zahedi, Vincent On and Irnya EthellPart VI: Software, Systems and Databases Integrated 5-D Cell Tracking and Linked Analytics in the FARSIGHT Open Source ToolkitAmine Merouane, Arunchalam Narayanaswamy and Badrinath RoysamVideo Bioinformatics Databases and SoftwareNinad S. Thakoor, Alberto C. Cruz and Bir BhanuUnderstanding of the Biological Process of Non-Verbal Communication: Facial Emotion and Expression RecognitionAlberto C. Cruz, Bir Bhanu and Ninad S. ThakoorIdentification and Retrieval of Moth Images Based on Wing PatternsLinan Feng, Bir Bhanu and John Heraty