Bioinformatics and Biomedical Engineering: 7th International Work-Conference, IWBBIO 2019, Granada, Spain, May 8-10, 2019, Proceedings, Part II

Description

The two-volume set LNBI 11465 and LNBI 11466 constitutes the proceedings of the 7th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2019, held in Granada, Spain, in May 2019. The total of 97 papers presented in the proceedings, was carefully reviewed and selected from 301 submissions. The papers are organized in topical sections as follows: Part I: High-throughput genomics: bioinformatics tools and medical applications; omics data acquisition, processing, and analysis; bioinformatics approaches for analyzing cancer sequencing data; next generation sequencing and sequence analysis; structural bioinformatics and function; telemedicine for smart homes and remote monitoring; clustering and analysis of biological sequences with optimization algorithms; and computational approaches for drug repurposing and personalized medicine. Part II: Bioinformatics for healthcare and diseases; computational genomics/proteomics; computational systems for modelling biological processes; biomedical engineering; biomedical image analysis; and biomedicine and e-health. Front Matter ....Pages i-xxix Front Matter ....Pages 1-1 Developing a DEVS-JAVA Model to Simulate and Pre-test Changes to Emergency Care Delivery in a Safe and Efficient Manner (Shrikant Pawar, Aditya Stanam)....Pages 3-14 Concept Bag: A New Method for Computing Concept Similarity in Biomedical Data (Richard L. Bradshaw, Ramkiran Gouripeddi, Julio C. Facelli)....Pages 15-23 A Reliable Method to Remove Batch Effects Maintaining Group Differences in Lymphoma Methylation Case Study (Giulia Pontali, Luciano Cascione, Alberto J. Arribas, Andrea Rinaldi, Francesco Bertoni, Rosalba Giugno)....Pages 24-32 Predict Breast Tumor Response to Chemotherapy Using a 3D Deep Learning Architecture Applied to DCE-MRI Data (Mohammed El Adoui, Stylianos Drisis, Mohammed Benjelloun)....Pages 33-40 Data Fusion for Improving Sleep Apnoea Detection from Single-Lead ECG Derived Respiration (Ana Jiménez Martín, Alejandro Cuevas Notario, J. Jesús García Domínguez, Sara García Villa, Miguel A. Herrero Ramiro)....Pages 41-50 Instrumented Shoes for 3D GRF Analysis and Characterization of Human Gait (João P. Santos, João P. Ferreira, Manuel Crisóstomo, A. Paulo Coimbra)....Pages 51-62 Novel Four Stages Classification of Breast Cancer Using Infrared Thermal Imaging and a Deep Learning Model (Sebastien Mambou, Ondrej Krejcar, Petra Maresova, Ali Selamat, Kamil Kuca)....Pages 63-74 Comparison of Numerical and Laboratory Experiment Examining Deformation of Red Blood Cell (Kristina Kovalcikova, Ivan Cimrak, Katarina Bachrata, Hynek Bachraty)....Pages 75-86 Levenberg-Marquardt Variants in Chrominance-Based Skin Tissue Detection (Ayca Kirimtat, Ondrej Krejcar, Ali Selamat)....Pages 87-98 A Mini-review of Biomedical Infrared Thermography (B-IRT) (Ayca Kirimtat, Ondrej Krejcar, Ali Selamat)....Pages 99-110 Mathematical Modeling and Docking of Medicinal Plants and Synthetic Drugs to Determine Their Effects on Abnormal Expression of Cholinesterase and Acetyl Cholinesterase Proteins in Alzheimer (Shaukat Iqbal Malik, Anum Munir, Ghulam Mujtaba Shah, Azhar Mehmood)....Pages 111-127 Definition of Organic Processes via Digital Monitoring Systems (Svetlana Martynova, Denis Bugaev)....Pages 128-135 Detection of Pools of Bacteria with Public Health Importance in Wastewater Effluent from a Municipality in South Africa Using Next Generation Sequencing and Metagenomics Analysis (Anthony Ayodeji Adegoke, Emmanuel Adetiba, Daniel T. Babalola, Matthew B. Akanle, Surendra Thakur, Anthony I. Okoh et al.)....Pages 136-146 Front Matter ....Pages 147-147 Web-Based Application for Accurately Classifying Cancer Type from Microarray Gene Expression Data Using a Support Vector Machine (SVM) Learning Algorithm (Shrikant Pawar)....Pages 149-154 Associating Protein Domains with Biological Functions: A Tripartite Network Approach (Elena Rojano, James Richard Perkins, Ian Sillitoe, Christine Orengo, Juan Antonio García Ranea, Pedro Seoane)....Pages 155-164 Interaction of ZIKV NS5 and STAT2 Explored by Molecular Modeling, Docking, and Simulations Studies (Gerardo Armijos-Capa, Paúl Pozo-Guerrón, F. Javier Torres, Miguel M. Méndez)....Pages 165-176 Entropy-Based Detection of Genetic Markers for Bacteria Genotyping (Marketa Nykrynova, Denisa Maderankova, Vojtech Barton, Matej Bezdicek, Martina Lengerova, Helena Skutkova)....Pages 177-188 Clustering of Klebsiella Strains Based on Variability in Sequencing Data (Vojtech Barton, Marketa Nykrynova, Matej Bezdicek, Martina Lengerova, Helena Skutkova)....Pages 189-199 Addition of Pathway-Based Information to Improve Predictions in Transcriptomics (Daniel Urda, Francisco J. Veredas, Ignacio Turias, Leonardo Franco)....Pages 200-208 Common Gene Regulatory Network for Anxiety Disorder Using Cytoscape: Detection and Analysis (Md. Rakibul Islam, Md. Liton Ahmed, Bikash Kumar Paul, Sayed Asaduzzaman, Kawsar Ahmed)....Pages 209-218 Insight About Nonlinear Dimensionality Reduction Methods Applied to Protein Molecular Dynamics (Vinicius Carius de Souza, Leonardo Goliatt, Priscila V. Z. Capriles)....Pages 219-230 Front Matter ....Pages 231-231 HIV Drug Resistance Prediction with Categorical Kernel Functions (Elies Ramon, Miguel Pérez-Enciso, Lluís Belanche-Muñoz)....Pages 233-244 Deciphering General Characteristics of Residues Constituting Allosteric Communication Paths (Girik Malik, Anirban Banerji, Maksim Kouza, Irina A. Buhimschi, Andrzej Kloczkowski)....Pages 245-258 Feature (Gene) Selection in Linear Homogeneous Cuts (Leon Bobrowski, Tomasz Łukaszuk)....Pages 259-270 DNA Sequence Alignment Method Based on Trilateration (Veska Gancheva, Hristo Stoev)....Pages 271-283 Convolutional Neural Networks for Red Blood Cell Trajectory Prediction in Simulation of Blood Flow (Michal Chovanec, Hynek Bachratý, Katarína Jasenčáková, Katarína Bachratá)....Pages 284-296 Platform for Adaptive Knowledge Discovery and Decision Making Based on Big Genomics Data Analytics (Plamenka Borovska, Veska Gancheva, Ivailo Georgiev)....Pages 297-308 Simulation Approaches to Stretching of Red Blood Cells (Alžbeta Bohiniková, Katarína Bachratá)....Pages 309-317 Describing Sequential Association Patterns from Longitudinal Microarray Data Sets in Humans (Augusto Anguita-Ruiz, Alberto Segura-Delgado, Rafael Alcala, Concepción Maria Aguilera, Jesus Alcala-Fernandez)....Pages 318-329 Front Matter ....Pages 331-331 Low Resolution Electroencephalographic-Signals-Driven Semantic Retrieval: Preliminary Results (Miguel Alberto Becerra, Edwin Londoño-Delgado, Oscar I. Botero-Henao, Diana Marín-Castrillón, Cristian Mejia-Arboleda, Diego Hernán Peluffo-Ordóñez)....Pages 333-342 A Simpler Command of Motor Using BCI (Yacine Fodil, Salah Haddab)....Pages 343-350 A Biomechanical Model Implementation for Upper-Limbs Rehabilitation Monitoring Using IMUs (Sara García de Villa, Ana Jimenéz Martín, Juan Jesús García Domínguez)....Pages 351-362 Non-generalized Analysis of the Multimodal Signals for Emotion Recognition: Preliminary Results (Edwin Londoño-Delgado, Miguel Alberto Becerra, Carolina M. Duque-Mejía, Juan Camilo Zapata, Cristian Mejía-Arboleda, Andrés Eduardo Castro-Ospina et al.)....Pages 363-373 Relations Between Maximal Half Squat Strength and Bone Variables in a Group of Young Overweight Men (Anthony Khawaja, Patchina Sabbagh, Jacques Prioux, Antonio Pinti, Georges El Khoury, Rawad El Hage)....Pages 374-384 Brain Hematoma Segmentation Using Active Learning and an Active Contour Model (Heming Yao, Craig Williamson, Jonathan Gryak, Kayvan Najarian)....Pages 385-396 DYNLO: Enhancing Non-linear Regularized State Observer Brain Mapping Technique by Parameter Estimation with Extended Kalman Filter (Andrés Felipe Soler Guevara, Eduardo Giraldo, Marta Molinas)....Pages 397-406 Analysis of the Behavior of the Red Blood Cell Model in a Tapered Microchannel (Mariana Ondrusova, Ivan Cimrak)....Pages 407-417 Radiofrequency Ablation for Treating Chronic Pain of Bones: Effects of Nerve Locations (Sundeep Singh, Roderick Melnik)....Pages 418-429 Front Matter ....Pages 431-431 Visualization and Cognitive Graphics in Medical Scientific Research (Olga G. Berestneva, Olga V. Marukhina, Sergey V. Romanchukov, Elena V. Berestneva)....Pages 433-444 Detection of Static Objects in an Image Based on Texture Analysis (Frantisek Jabloncik, Libor Hargas, Jozef Volak, Dusan Koniar)....Pages 445-457 Artefacts Recognition and Elimination in Video Sequences with Ciliary Respiratory Epithelium (Libor Hargas, Zuzana Loncova, Dusan Koniar, Frantisek Jabloncik, Jozef Volak)....Pages 458-468 Cross Modality Microscopy Segmentation via Adversarial Adaptation (Yue Guo, Qian Wang, Oleh Krupa, Jason Stein, Guorong Wu, Kira Bradford et al.)....Pages 469-478 Assessment of Pain-Induced Changes in Cerebral Microcirculation by Imaging Photoplethysmography (Alexei A. Kamshilin, Olga A. Lyubashina, Maxim A. Volynsky, Valeriy V. Zaytsev, Oleg V. Mamontov)....Pages 479-489 Detection of Subclinical Keratoconus Using Biometric Parameters (Jose Sebastián Velázquez-Blázquez, Francisco Cavas-Martínez, Jorge Alió del Barrio, Daniel G. Fernández-Pacheco, Francisco J. F. Cañavate, Dolores Parras-Burgos et al.)....Pages 490-501 A Computer Based Blastomere Identification and Evaluation Method for Day 2 Embryos During IVF/ICSI Treatments (Charalambos Strouthopoulos, Athanasios Nikolaidis)....Pages 502-513 Detection of Breast Cancer Using Infrared Thermography and Deep Neural Networks (Francisco Javier Fernández-Ovies, Edwin Santiago Alférez-Baquero, Enrique Juan de Andrés-Galiana, Ana Cernea, Zulima Fernández-Muñiz, Juan Luis Fernández-Martínez)....Pages 514-523 Development of an ECG Smart Jersey Based on Next Generation Computing for Automated Detection of Heart Defects Among Athletes (Emmanuel Adetiba, Ekpoki N. Onosenema, Victor Akande, Joy N. Adetiba, Jules R. Kala, Folarin Olaloye)....Pages 524-533 Front Matter ....Pages 535-535 Analysis of Finger Thermoregulation by Using Signal Processing Techniques (María Camila Henao Higuita, Macheily Hernández Fernández, Delio Aristizabal Martínez, Hermes Fandiño Toro)....Pages 537-549 Comparative Study of Feature Selection Methods for Medical Full Text Classification (Carlos Adriano Gonçalves, Eva Lorenzo Iglesias, Lourdes Borrajo, Rui Camacho, Adrián Seara Vieira, Célia Talma Gonçalves)....Pages 550-560 Estimation of Lung Properties Using ANN-Based Inverse Modeling of Spirometric Data (Adam G. Polak, Dariusz Wysoczański, Janusz Mroczka)....Pages 561-572 Model of the Mouth Pressure Signal During Pauses in Total Liquid Ventilation (Jonathan Vandamme, Mathieu Nadeau, Julien Mousseau, Jean-Paul Praud, Philippe Micheau)....Pages 573-581 Back Matter ....Pages 583-587