Chromatin immunoprecipitation assays: methods and protocols

Description

1. The State-of-the-Art of Chromatin Immunoprecipitation Philippe Collas2. Characterization and Quality Control of Antibodies Used in ChIP AssaysGeraldine Goens, Dorina Rusu, Laurent Bultot, Jean-Jacques Goval, and Juana Magdalena3. The Fast Chromatin Immunoprecipitation MethodJoel Nelson, Oleg Denisenko, and Karol Bomsztyk4. ChIP: Chromatin Immunoprecipitation for Small Cell NumbersJohn Arne Dahl and Philippe Collas5. Fish'n ChIPs: Chromatin Immunoprecipitation in the Zebrafish EmbryoLeif C. Lindeman, Linn T. Vogt-Kielland, Peter Alestroem, and Philippe Collas6. Epitope Tagging of Endogenous Proteins for Genome-Wide Chromatin Immunoprecipitation AnalysisZhenghe Wang7. Flow Cytometric and Laser Scanning Microscopic Approaches in Epigenetics ResearchLorant Szekvolgyi, Laszlo Imre, Doan Xuan Quang Minh, Eva Hegedus, Zsolt Bacso, and Gabor Szabo8. Serial Analysis of Binding Elements for Transcription FactorsJiguo Chen9. Modeling and Analysis of ChIP-Chip Experiments Raphael Gottardo10. Use of SNP Arrays for ChIP Assays: Computational AspectsEnrique M. Muro, Jennifer A. McCann Michael A. Rudnicki, and Miguel A. Andrade-Navarro11. DamID: A Methylation-Based Chromatin Profiling ApproachMona Abed, Dorit Kenyagin-Karsenti, Olga Boico, and Amir Orian12. Chromosome Conformation Capture (from 3C to 5C) and Its ChIP-Based ModificationAlexey Gavrilov, Elvira Eivazova, Iryna Priozhkova, Marc Lipinski, Sergey Razin, and Yegor Vassetzky13. Determining Spatial Chromatin Organization of Large Genomic Regions Using 5C TechnologyNynke L. van Berkum and Job Dekker14. Analysis of Nascent RNA Transcripts by Chromatin RNA ImmunoprecipitationAles Obrdlik andPiergiorgio Percipalle15. Methyl DNA ImmunoprecipitationJean Jacques Goval and Juana Magdalena16. Immunoprecipitation of Methylated DNAAnita L. Sorensen and Philippe Collas