Shape in Medical Imaging: International Workshop, ShapeMI 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 20, 2018, Proceedings

Description

This book constitutes the proceedings of the Workshop on Shape in Medical Imaging, ShapeMI 2018, held in conjunction with the 21st International Conference on Medical Image Computing, MICCAI 2018, in Granada, Spain, in September 2018. The 26 full papers and 2 short papers presented were carefully reviewed and selected for inclusion in this volume. The papers discuss novel approaches and applications in shape and geometry processing and their use in research and clinical studies and explore novel, cutting-edge theoretical methods and their usefulness for medical applications, e.g., from the fields of geometric learning or spectral shape analysis. Front Matter ....Pages I-XII Front Matter ....Pages 1-1 Deformetrica 4: An Open-Source Software for Statistical Shape Analysis (Alexandre Bône, Maxime Louis, Benoît Martin, Stanley Durrleman)....Pages 3-13 On the Evaluation and Validation of Off-the-Shelf Statistical Shape Modeling Tools: A Clinical Application (Anupama Goparaju, Ibolya Csecs, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Ross Whitaker et al.)....Pages 14-27 Characterizing Anatomical Variability and Alzheimer’s Disease Related Cortical Thinning in the Medial Temporal Lobe Using Graph-Based Groupwise Registration and Point Set Geodesic Shooting (Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Ranjit Ittyerah, Jiancong Wang, David A. Wolk et al.)....Pages 28-37 Interpretable Spiculation Quantification for Lung Cancer Screening (Wookjin Choi, Saad Nadeem, Sadegh Riyahi, Joseph O. Deasy, Allen Tannenbaum, Wei Lu)....Pages 38-48 Shape and Facet Analyses of Alveolar Airspaces of the Lung (Roman Grothausmann, Christian Mühlfeld, Matthias Ochs, Lars Knudsen)....Pages 49-64 SlicerSALT: Shape AnaLysis Toolbox (Jared Vicory, Laura Pascal, Pablo Hernandez, James Fishbaugh, Juan Prieto, Mahmoud Mostapha et al.)....Pages 65-72 3D Shape Analysis for Coarctation of the Aorta (Lina Gundelwein, Heiko Ramm, Leonid Goubergrits, Marcus Kelm, Hans Lamecker)....Pages 73-77 Morphometric Sex Estimation from the Hip Bone by Means of the HIP 1.1 Software (Miroslav Králík, Ondřej Klíma, Petra Urbanová, Lenka Polcerová, Martin Čuta)....Pages 78-89 Front Matter ....Pages 91-91 Deformable Cubic Hermite Mesh Templates for Statistical Liver Shape Analysis (Hao Bo Yu, Yui Nakagawa, Harvey Ho, Atsushi Saito, Akinobu Shimizu)....Pages 93-101 Global Divergences Between Measures: From Hausdorff Distance to Optimal Transport (Jean Feydy, Alain Trouvé)....Pages 102-115 Parallel Transport of Surface Deformations from Pole Ladder to Symmetrical Extension (Shuman Jia, Nicolas Duchateau, Pamela Moceri, Maxime Sermesant, Xavier Pennec)....Pages 116-124 4D Continuous Medial Representation Trajectory Estimation for Longitudinal Shape Analysis (Sungmin Hong, James Fishbaugh, Guido Gerig)....Pages 125-136 Probabilistic Fitting of Active Shape Models (Andreas Morel-Forster, Thomas Gerig, Marcel Lüthi, Thomas Vetter)....Pages 137-146 Automatic Extraction of a Piecewise Symmetry Surface of a 3D Mesh: Application to Scoliosis (Marion Morand, Olivier Comas, Gérard Subsol, Christophe Fiorio)....Pages 147-159 Image Registration and Predictive Modeling: Learning the Metric on the Space of Diffeomorphisms (Ayagoz Mussabayeva, Alexey Kroshnin, Anvar Kurmukov, Yulia Denisova, Li Shen, Shan Cong et al.)....Pages 160-168 Joint Registration of Multiple Generalized Point Sets (Zhe Min, Jiaole Wang, Max Q.-H. Meng)....Pages 169-177 OCT Segmentation: Integrating Open Parametric Contour Model of the Retinal Layers and Shape Constraint to the Mumford-Shah Functional (Jinming Duan, Weicheng Xie, Ryan Wen Liu, Christopher Tench, Irene Gottlob, Frank Proudlock et al.)....Pages 178-188 Segmenting Bones Using Statistical Shape Modeling and Local Template Matching (Elham Taghizadeh, Alexandre Terrier, Fabio Becce, Alain Farron, Philippe Büchler)....Pages 189-194 Shape Analysis of White Matter Tracts via the Laplace-Beltrami Spectrum (Lindsey Kitchell, Daniel Bullock, Soichi Hayashi, Franco Pestilli)....Pages 195-206 Virtual 2D-3D Fracture Reduction with Bone Length Recovery Using Statistical Shape Models (Ondřej Klíma, Roman Madeja, Michal Španel, Martin Čuta, Pavel Zemčík, Pavel Stoklásek et al.)....Pages 207-219 Front Matter ....Pages 221-221 Deep Shape Analysis on Abdominal Organs for Diabetes Prediction (Benjamín Gutiérrez-Becker, Sergios Gatidis, Daniel Gutmann, Annette Peters, Christopher Schlett, Fabian Bamberg et al.)....Pages 223-231 Nonparametric Aggregation of Geodesic Trends for Longitudinal Data Analysis (Kristen M. Campbell, P. Thomas Fletcher)....Pages 232-243 DeepSSM: A Deep Learning Framework for Statistical Shape Modeling from Raw Images (Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker)....Pages 244-257 Combining Deep Learning and Shape Priors for Bi-Ventricular Segmentation of Volumetric Cardiac Magnetic Resonance Images (Jinming Duan, Jo Schlemper, Wenjia Bai, Timothy J. W. Dawes, Ghalib Bello, Carlo Biffi et al.)....Pages 258-267 Deep Learning for Quality Control of Subcortical Brain 3D Shape Models (Dmitry Petrov, Boris A. Gutman, Egor Kuznetsov, Christopher R. K. Ching, Kathryn Alpert, Artemis Zavaliangos-Petropulu et al.)....Pages 268-276 Discrimination of Volumetric Shapes Using Orthogonal Tensor Decomposition (Hayato Itoh, Atsushi Imiya)....Pages 277-290 Organ-At-Risk Segmentation in Brain MRI Using Model-Based Segmentation: Benefits of Deep Learning-Based Boundary Detectors (Eliza Orasanu, Tom Brosch, Carri Glide-Hurst, Steffen Renisch)....Pages 291-299 Uncertainty Quantification in CNN-Based Surface Prediction Using Shape Priors (Katarína Tóthová, Sarah Parisot, Matthew C. H. Lee, Esther Puyol-Antón, Lisa M. Koch, Andrew P. King et al.)....Pages 300-310 Back Matter ....Pages 311-312