Data Integration in the Life Sciences: 13th International Conference, DILS 2018, Hannover, Germany, November 20-21, 2018, Proceedings

Description

This book constitutes revised selected papers from the 13th International Conference on Data Integration in the Life Sciences, DILS 2018, held in Hannover, Germany, in November 2018. The 5 full, 8 short, 3 poster and 4 demo papers presented in this volume were carefully reviewed and selected from 22 submissions. The papers are organized in topical sections named: big biomedical data integration and management; data exploration in the life sciences; biomedical data analytics; and big biomedical applications. Front Matter ....Pages I-XI Front Matter ....Pages 1-1 Do Scaling Algorithms Preserve Word2Vec Semantics? A Case Study for Medical Entities (Janus Wawrzinek, José María González Pinto, Philipp Markiewka, Wolf-Tilo Balke)....Pages 3-16 Combining Semantic and Lexical Measures to Evaluate Medical Terms Similarity (Silvio Domingos Cardoso, Marcos Da Silveira, Ying-Chi Lin, Victor Christen, Erhard Rahm, Chantal Reynaud-Delaître et al.)....Pages 17-32 Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database (Lena Wiese, Chimi Wangmo, Lukas Steuernagel, Armin O. Schmitt, Mehmet Gültas)....Pages 33-43 A Knowledge-Driven Pipeline for Transforming Big Data into Actionable Knowledge (Maria-Esther Vidal, Kemele M. Endris, Samaneh Jozashoori, Guillermo Palma)....Pages 44-49 Leaving No Stone Unturned: Using Machine Learning Based Approaches for Information Extraction from Full Texts of a Research Data Warehouse (Johanna Fiebeck, Hans Laser, Hinrich B. Winther, Svetlana Gerbel)....Pages 50-58 Front Matter ....Pages 59-59 Towards Research Infrastructures that Curate Scientific Information: A Use Case in Life Sciences (Markus Stocker, Manuel Prinz, Fatemeh Rostami, Tibor Kempf)....Pages 61-74 Interactive Visualization for Large-Scale Multi-factorial Research Designs (Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher, Sven Nahnsen)....Pages 75-84 FedSDM: Semantic Data Manager for Federations of RDF Datasets (Kemele M. Endris, Maria-Esther Vidal, Sören Auer)....Pages 85-90 Poster Paper Data Integration for Supporting Biomedical Knowledge Graph Creation at Large-Scale (Samaneh Jozashoori, Tatiana Novikova, Maria-Esther Vidal)....Pages 91-96 DISBi: A Flexible Framework for Integrating Systems Biology Data (Rüdiger Busche, Henning Dannheim, Dietmar Schomburg)....Pages 97-102 Front Matter ....Pages 103-103 Using Machine Learning to Distinguish Infected from Non-infected Subjects at an Early Stage Based on Viral Inoculation (Ghanshyam Verma, Alokkumar Jha, Dietrich Rebholz-Schuhmann, Michael G. Madden)....Pages 105-121 Automated Coding of Medical Diagnostics from Free-Text: The Role of Parameters Optimization and Imbalanced Classes (Luiz Virginio, Julio Cesar dos Reis)....Pages 122-134 A Learning-Based Approach to Combine Medical Annotation Results (Victor Christen, Ying-Chi Lin, Anika Groß, Silvio Domingos Cardoso, Cédric Pruski, Marcos Da Silveira et al.)....Pages 135-143 Knowledge Graph Completion to Predict Polypharmacy Side Effects (Brandon Malone, Alberto García-Durán, Mathias Niepert)....Pages 144-149 Front Matter ....Pages 151-151 Lung Cancer Concept Annotation from Spanish Clinical Narratives (Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodríguez-González, Ernestina Menasalvas)....Pages 153-163 Linked Data Based Multi-omics Integration and Visualization for Cancer Decision Networks (Alokkumar Jha, Yasar Khan, Qaiser Mehmood, Dietrich Rebholz-Schuhmann, Ratnesh Sahay)....Pages 164-181 The Hannover Medical School Enterprise Clinical Research Data Warehouse: 5 Years of Experience (Svetlana Gerbel, Hans Laser, Norman Schönfeld, Tobias Rassmann)....Pages 182-194 User-Driven Development of a Novel Molecular Tumor Board Support Tool (Marc Halfmann, Holger Stenzhorn, Peter Gerjets, Oliver Kohlbacher, Uwe Oestermeier)....Pages 195-199 Using Semantic Programming for Developing a Web Content Management System for Semantic Phenotype Data (Lars Vogt, Roman Baum, Christian Köhler, Sandra Meid, Björn Quast, Peter Grobe)....Pages 200-206 Converting Alzheimer’s Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data (Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot)....Pages 207-215 Back Matter ....Pages 217-218